CRISP-view: Database of CRISPR Screen Data





Results

Sample Species Cell Line Type Publication QC Sample ID

Inspector

Sample
Species
Technology
Cell Line
Tissue
Source
Treatment
Other Condition
Culture Days
Normalized Method
Library
Citation
PMID
Metrics Value Quality Meaning Threshold
Mapped Reads
Total number of reads mapped to the sgRNA library >= 100*#sgRNA (TotalsgRNAs)
Percentage
Percentage of mapped reads to the total number of sequencing reads >= 65%
Zerocounts
Number of sgRNAs with zero read counts <= 1% #0/#sgRNA (Zerocounts / TotalsgRNAs)
GiniIndex
Gini index of log-scaled read count distributions <= 0.2 for plasmid and initial state samples
<= 0.3 for negative selection samples
NegSelQC
Enrichment score from GSEA >= 0.68 (an empirical value letting 2/3 of samples pass)
NegSelQCPval
P-value of NegSelQC <= 1e-9 (an empirical value letting 2/3 of samples pass)
Over Selected -
This sample is strongly positively selected GiniIndex > 0.8